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Converting Common Data Formats to Phyloseq and TreeSummarizedExperiment6 months ago
Importing Data from biome Format | To Phyloseq | To TreeSummarizedExperiment | Importing Data from qiime Format | Importing Data from mothur Format | Importing Data from metaphlan Format | Conclusion | Session info
dar 1.9.0Francesc Catala-Moll data_import.Rmd
Introduction to dar8 months ago
An Example | An Initial Recipe | Preprocessing Steps | Differential Analysis | Prep | Bake and cool | Session info
dar 1.9.0Francesc Catala-Moll dar.Rmd
Workflow with real data8 months ago
Load dar package and data | Recipe initialization | Recipe QC and preprocessing steps definition | Define Differential Analysis (DA) steps | Prep recipe | Default results extraction | Exploration for consensus strategie definition | Define a consesus strategy using bake | Extract results | Session info
dar 1.9.0Francesc Catala-Moll article.Rmd
dar: Case of Study8 months ago
Introduction | Load dar package and data | Recipe Initialization | Recipe QC and Preprocessing Steps Definition | Define Differential Analysis (DA) steps | Prep recipe | Default results extraction | Exploration for consensus strategie definition | Define a consesus strategy using bake | Extract results | Session Info
dar 1.9.0Francesc Catala-Moll bioinformatics_vignette.Rmd
Introduction to biocroxytest3 years ago
biocroxytest setup | Basic Process | Session info
biocroxytest 1.9.0Francesc Catala-Moll biocroxytest.Rmd
Filtering and Subsetting3 years ago
step_filter_taxa | Convenience Wrappers | step_filter_by_abundance | step_filter_by_prevalence | step_filter_by_rarity | step_filter_by_variance | subset_taxa | Conclusion | Session info
dar 1.9.0Francesc Catala-Moll filtering_subsetting.Rmd
Reproducibility in Microbiome Data Analysis3 years ago
Exporting Steps of a Recipe | Importing Steps from a JSON File | Limitations and Considerations | Conclusion | Session info
dar 1.9.0Francesc Catala-Moll import_export_recipes.Rmd